tppccrNormalize: Normalize data from TPP-CCR experiments

Description

Normalize each fold change column by its median.

Usage

tppccrNormalize(data)

Arguments

data

list of expressionSets with measurements to be normalized

Value

List of expressionSet objects storing the normalized fold changes, as well as row and column metadata. In each expressionSet S, the fold changes can be accessed by exprs(S). Protein names can be accessed by featureNames(S). Isobaric labels and the corresponding concentrations are returned by S$label and S$concentration.

Examples

Run this code

data(hdacCCR_smallExample)
tppccrData <- tppccrImport(configTable=hdacCCR_config, data = hdacCCR_data)
tppccrNorm <- tppccrNormalize(data=tppccrData)
head(exprs(tppccrNorm[[1]]))

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