Deprecated. This function will be removed in a future version of
TreeTools.
Use RootTree() instead.
EnforceOutgroup(tree, outgroup)# S3 method for phylo
EnforceOutgroup(tree, outgroup)
# S3 method for character
EnforceOutgroup(tree, outgroup)
EnforceOutgroup() returned a tree of class phylo where all
outgroup taxa are sister to all remaining taxa, without modifying the
ingroup topology.
Either a tree of class phylo; or (for EnforceOutgroup())
a character vector listing the names of all the taxa in the tree, from which
a random tree will be generated.
Character vector containing the names of taxa to include in the outgroup.
Given a tree or a list of taxa, EnforceOutgroup() rearranged the ingroup
and outgroup taxa such that the two are sister taxa across the root, without
changing the relationships within the ingroup or within the outgroup.
For a more robust implementation, see RootTree(), which will
eventually replace this function
(#30).
Other tree manipulation:
AddTip(),
CollapseNode(),
ConsensusWithout(),
DropTip(),
ImposeConstraint(),
KeptPaths(),
KeptVerts(),
LeafLabelInterchange(),
MakeTreeBinary(),
Renumber(),
RenumberTips(),
RenumberTree(),
RootTree(),
SortTree(),
Subtree(),
TipTimedTree(),
TrivialTree