SplitMatchProbability

LnSplitMatchProbability

(<code>Ln</code>)<code>SplitMatchProbability()</code>calculates the probability that two random
splits of the sizes provided will be at least as similar as the two
specified.

Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
tree rearrangement;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of split support;
plotting the position of rogue taxa (Klopfstein & Spasojevic 2019)
<doi:10.1371/journal.pone.0212942>;
calculation of ancestor-descendant relationships,
of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>,
and of tree balance (Mir et al. 2013, Lemant et al. 2022)
<doi:10.1016/j.mbs.2012.10.005>, <doi:10.1093/sysbio/syac027>;
artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.

Martin R. Smith

TreeTools

Create, Modify and Analyse Phylogenetic Trees

Emmanuel Paradis

Robert Noble

SplitMatchProbability function

<dl><dt>split1, split2</dt>
<dd>Logical vectors listing terminals in same order, such that
each terminal is identified as a member of the ingroup (<code>TRUE</code>) or outgroup
(<code>FALSE</code>) of the respective bipartition split.</dd></dl>

Arguments

<a href="https://orcid.org/0000-0001-5660-1727">Martin R. Smith</a>
(<a href="/link/martin.smith%40durham.ac.uk?package=TreeTools&version=1.12.0" data-mini-rdoc="TreeTools::martin.smith@durham.ac.uk">martin.smith@durham.ac.uk</a>)

Author

Probability of matching this well — SplitMatchProbability

<dl>

<dt>split1, split2</dt>
<dd>Logical vectors listing terminals in same order, such that
each terminal is identified as a member of the ingroup (<code>TRUE</code>) or outgroup
(<code>FALSE</code>) of the respective bipartition split.</dd>

</dl>

<a href='https://orcid.org/0000-0001-5660-1727'>Martin R. Smith</a>
(<a href='mailto:martin.smith@durham.ac.uk'>martin.smith@durham.ac.uk</a>)

SplitMatchProbability: Probability of matching this well

Description

Usage

Value

Arguments

Author

See Also

Examples