vis_gene_drug_response_asso

See analyze_gene_drug_response_asso for examples.

Provides functions and a Shiny application for downloading,
analyzing and visualizing datasets from UCSC Xena
(<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.

Shixiang Wang

UCSCXenaShiny

Interactive Analysis of UCSC Xena Data

Shensuo Li

Yi Xiong

Longfei Zhao

Kai Gu

Yin Li

Fei Zhao

vis_gene_drug_response_asso function

<dl><dt>Gene</dt>
<dd>a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature (<code>"TP53 + 2 * KRAS - 1.3 * PTEN"</code>).</dd>
<dt>x_axis_type</dt>
<dd>set the value type for X axis.</dd>
<dt>output_form</dt>
<dd><code>plotly</code> or <code>ggplot2</code>.</dd></dl>

Arguments

Visualize Gene and Drug-Target Association with CCLE Data — vis_gene_drug_response_asso

<dl>

<dt>Gene</dt>
<dd>a molecular identifier (e.g., "TP53") or a formula specifying
genomic signature (<code>"TP53 + 2 * KRAS - 1.3 * PTEN"</code>).</dd>


<dt>x_axis_type</dt>
<dd>set the value type for X axis.</dd>


<dt>output_form</dt>
<dd><code>plotly</code> or <code>ggplot2</code>.</dd>

</dl>

vis_gene_drug_response_asso: Visualize Gene and Drug-Target Association with CCLE Data

Description

Usage

Value

Arguments