UCSCXenaShiny (version 2.1.0)

vis_gene_drug_response_diff: Visualize Gene and Drug Response Difference with CCLE Data

Description

See analyze_gene_drug_response_diff for examples.

Usage

vis_gene_drug_response_diff(
  Gene = "TP53",
  tissue = "lung",
  Show.P.label = TRUE,
  Method = "wilcox.test",
  values = c("#DF2020", "#DDDF21"),
  alpha = 0.5
)

Value

a ggplot object.

Arguments

Gene

a molecular identifier (e.g., "TP53") or a formula specifying genomic signature ("TP53 + 2 * KRAS - 1.3 * PTEN").

tissue

select cell line origin tissue.

Show.P.label

TRUE or FALSE present p value with number or label *, **, *** and ****

Method

default method is wilcox.test

values

the color to fill tumor or normal

alpha

set alpha for dots.