VLF (version 1.1)

MODE.freq: Modal Frequencies

Description

Returns the frequencies of the nucleotides in each position of nucleotide sequence that occurs most often.

Usage

MODE.freq(freq, seqlength)

Value

A vector of frequencies for the first modal sequence.

Arguments

freq

Frequency matrix for nucleotides.

seqlength

Length of the nucleotide sequence.

Author

Taryn B. T. Athey and Paul D. McNicholas

Details

The argument freq can be calculated using the function ffrequency.matrix.function.

Examples

if (FALSE) data(birds)
species.names <- birds[,2]
specimen.Number <- nrow(birds)
rownames(birds) <- species.names
Nuc.count <- count.function(birds, specimen.Number, 648)
frequency.matrix <- ffrequency.matrix.function(Nuc.count, 648)
birdSpec.freq <- specimen.frequencies(frequency.matrix, birds, specimen.Number, species.names, 648)
nucleotide.modalSequence <- MODE(frequency.matrix, 648)
Bird_first.modal.frequencies <- MODE.freq(frequency.matrix, 648)