"genePhylostrata"(object)
"genePhylostratum"(object, ids)
"annotateVariants"(annObj, variantsVR, param ,BPPARAM=bpparam("SerialParam"))
"organism"(object)GenePhylostrataDb object.ENSGXXXXX)
or Entrez Gene Identifiers.GenePhylostrataDb object.VRanges object with the variants to annotate.VariantFilteringParam-class object.BiocParallelParam specifying parameters related to
the parallel execution of this function. See function bpparam()
from the BiocParallel package.GenePhylostrataDb class and associated methods serve the purpose of
storing and manipulating gene-level conservation information in the form of levels
of phylogenetic strata (Neme and Tautz, 2013). One such objects is created at
loading time by the VariantFiltering package with the constructor function
GenePhylostrataDb(), and it is called humanGenesPhylostrata.phastCons100way.UCSC.hg19