coords_to_iso3

This function takes a set of longitude and latitude coordinates and retrieves the administrative
units that each point lies within. The administrative units are given in the ISO-3166 Alpha-3 country code
standard (<a href="https://en.wikipedia.org/wiki/ISO_3166-1_alpha-3">https://en.wikipedia.org/wiki/ISO_3166-1_alpha-3</a>).

Provides reproducible functions for collating and analyzing
data from environmental sampling studies. Environmental Sampling (ES)
of infectious diseases involves collecting samples from various sources
(such as sewage, water, air, soil, or surfaces) to monitor the presence
of pathogens in the environment. Analysis of ES data often requires the
calculation of Real-Time Quantitative PCR (qPCR) variables, normalizing
ES observations, and analyzing sampling site characteristics. To help
reduce the complexity of these analyses we have implemented tools that
assist with establishing standardized ES data formats, absolute and
relative quantification of qPCR data, estimation of qPCR amplification
efficiency, and collating open-source spatial data for sampling sites.

John R Giles

Tools for Analyzing Wastewater and Environmental Sampling Data

coords_to_iso3 function

<dl><dt>lon</dt>
<dd>A numeric vector giving the longitude of the sampling sites in Decimal Degrees.</dd>
<dt>lat</dt>
<dd>A numeric vector giving the latitude of the sampling sites in Decimal Degrees.</dd></dl>

Arguments

This function takes a set of longitude and latitude coordinates and retrieves the administrative
units that each point lies within. The administrative units are given in the ISO-3166 Alpha-3 country code
standard (<a href='https://en.wikipedia.org/wiki/ISO_3166-1_alpha-3'>https://en.wikipedia.org/wiki/ISO_3166-1_alpha-3</a>).

Convert coordinates to ISO country code — coords_to_iso3

<dl>

<dt>lon</dt>
<dd>A numeric vector giving the longitude of the sampling sites in Decimal Degrees.</dd>


<dt>lat</dt>
<dd>A numeric vector giving the latitude of the sampling sites in Decimal Degrees.</dd>

</dl>

coords_to_iso3: Convert coordinates to ISO country code

Description

Usage

Value

Arguments

Examples