plotModuleSignificance: Barplot of module significance
Description
Plot a barplot of gene significance.Usage
plotModuleSignificance(
geneSignificance,
colors,
boxplot = FALSE,
main = "Gene significance across modules,",
ylab = "Gene Significance", ...)
Arguments
geneSignificance
a numeric vector giving gene significances.
colors
a character vector specifying module assignment for the genes whose significance is
given in geneSignificance. The modules should be labeled by colors.
boxplot
logical: should a boxplot be produced instead of a barplot?
main
main title for the plot.
ylab
y axis label for the plot.
...
other graphical parameters to plot. Details
Given individual gene significances and their module assigment, the function calculates the module
significance for each module as the average gene significance of the genes within the module. The result
is plotted in a barplot or boxplot form. Each bar or box is labeled by the corresponding module color.References
Bin Zhang and Steve Horvath (2005) "A General Framework for Weighted Gene Co-Expression
Network Analysis", Statistical Applications in Genetics and Molecular Biology: Vol. 4: No. 1, Article 17
Dong J, Horvath S (2007) Understanding Network Concepts in Modules, BMC Systems Biology 2007, 1:24