BrainRegionMarkers

<p>This matrix gives a predefined set of marker genes for many regions of the human brain, using data from the Allen Human Brain Atlas (https://human.brain-map.org/) as reported in: Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, et al. (2012) An Anatomically Comprehensive Atlas of the Adult Human Brain Transcriptome. Nature (in press).  It is used with userListEnrichment to search user-defined gene lists for enrichment.</p>

datasets

Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.

Peter Langfelder

WGCNA

Weighted Correlation Network Analysis

Steve Horvath

Chaochao Cai

Jun Dong

Jeremy Miller

Lin Song

Andy Yip

Bin Zhang

BrainRegionMarkers function

<p>A 28477 x 2 matrix of characters containing Gene / Category pairs.  The first column (Gene) lists genes corresponding to a given category (second column).  Each Category entry is of the form &lt;Brain Region&gt;_&lt;Marker Type&gt;__HBA.  Note that the matrix is sorted first by Category and then by Gene, such that all genes related to the same category are listed sequentially.</p>

Format

Gene Markers for Regions of the Human Brain — BrainRegionMarkers

Gene Markers for Regions of the Human Brain

BrainRegionMarkers: Gene Markers for Regions of the Human Brain

Description

Usage

Arguments

Format

Examples