ImmunePathwayLists: Immune Pathways with Corresponding Gene Markers
Description
This matrix gives a predefined set of marker genes for many immune response pathways, as assembled by Brian Modena (a member of Daniel R Salomon's lab at Scripps Research Institute), and colleagues. It is used with userListEnrichment to search user-defined gene lists for enrichment.
Usage
data(ImmunePathwayLists)
Arguments
Format
A 3597 x 2 matrix of characters containing Gene / Category pairs. The first column (Gene) lists genes corresponding to a given category (second column). Each Category entry is of the form <Immune Pathway>__ImmunePathway. Note that the matrix is sorted first by Category and then by Gene, such that all genes related to the same category are listed sequentially.