PWLists

<p>This matrix gives a predefined set of marker genes for many immune response pathways, as assembled by Mike Palazzolo and Jim Wang from CHDI, and colleagues.  It is used with userListEnrichment to search user-defined gene lists for enrichment.</p>

datasets

Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.

Peter Langfelder

WGCNA

Weighted Correlation Network Analysis

Steve Horvath

Chaochao Cai

Jun Dong

Jeremy Miller

Lin Song

Andy Yip

Bin Zhang

PWLists function

<p>A 124350 x 2 matrix of characters containing 2724 Gene / Category pairs.  The first column (Gene) lists genes corresponding to a given category (second column).  Each Category entry is of the form &lt;gene set&gt;__&lt;reference&gt;.</p>

Format

Pathways with Corresponding Gene Markers - Compiled by Mike Palazzolo and Jim Wang from CHDI — PWLists

Pathways with Corresponding Gene Markers - Compiled by Mike Palazzolo and Jim Wang from CHDI

PWLists: Pathways with Corresponding Gene Markers - Compiled by Mike Palazzolo and Jim Wang from CHDI

Description

Usage

Arguments

Format

Examples