Graphical representation of the Topological Overlap Matrix using a heatmap plot combined with the corresponding hierarchical clustering dendrogram and module colors.
TOMplot(
dissim,
dendro,
Colors = NULL,
ColorsLeft = Colors,
terrainColors = FALSE,
setLayout = TRUE,
...)None.
a matrix containing the topological overlap-based dissimilarity
the corresponding hierarchical clustering dendrogram
optional specification of module colors to be plotted on top
optional specification of module colors on the left side. If NULL,
Colors will be used.
logical: should terrain colors be used?
logical: should layout be set? If TRUE, standard layout for one plot will be
used. Note that this precludes multiple plots on one page. If FALSE, the user is responsible for
setting the correct layout.
other graphical parameters to heatmap.
Steve Horvath and Peter Langfelder
The standard heatmap function uses the layout function to set the following
layout (when Colors is given):
0 0 5
0 0 2
4 1 3
To get a meaningful heatmap plot, user-set layout must respect this geometry.
heatmap, the workhorse function doing the plotting.