Calculation of branch split based on expression data. This function is used as a plugin for the dynamicTreeCut package and the user should not call this function directly.
branchSplit(
expr,
branch1, branch2,
discardProp = 0.05, minCentralProp = 0.75,
nConsideredPCs = 3,
signed = FALSE,
getDetails = TRUE, ...)A single number or a list containing detils of the calculation.
Expression data.
Branch 1,
Branch 2.
Proportion of data to be discarded as outliers.
Minimum central proportion
Number of principal components to consider.
Should the network be considered signed?
Should details of the calculation be returned?
Other arguments. Present for compatibility; currently unusued.
Peter Langfelder