WGCNA (version 1.73)

fixDataStructure: Put single-set data into a form useful for multiset calculations.

Description

Encapsulates single-set data in a wrapper that makes the data suitable for functions working on multiset data collections.

Usage

fixDataStructure(data, verbose = 0, indent = 0)

Value

As described above, input data in a format suitable for functions operating on multiset data collections.

Arguments

data

A dataframe, matrix or array with two dimensions to be encapsulated.

verbose

Controls verbosity. 0 is silent.

indent

Controls indentation of printed progress messages. 0 means no indentation, every unit adds two spaces.

Author

Peter Langfelder,

Details

For multiset calculations, many quantities (such as expression data, traits, module eigengenes etc) are presented by a common structure, a vector of lists (one list for each set) where each list has a component data that contains the actual (expression, trait, eigengene) data for the corresponding set in the form of a dataframe. This funtion creates a vector of lists of length 1 and fills the component data with the content of parameter data.

See Also

checkSets

Examples

singleSetData = matrix(rnorm(100), 10,10);
encapsData = fixDataStructure(singleSetData);
length(encapsData)
names(encapsData[[1]])
dim(encapsData[[1]]$data)
all.equal(encapsData[[1]]$data, singleSetData);