moduleNumber

Detects branches of on the input dendrogram by performing a fixed-height cut.

cluster

Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.

Peter Langfelder

WGCNA

Weighted Correlation Network Analysis

Steve Horvath

Chaochao Cai

Jun Dong

Jeremy Miller

Lin Song

Andy Yip

Bin Zhang

moduleNumber function

<dl> <dt>dendro</dt>
<dd>a hierarchical clustering dendorgram such as one returned by <code>hclust</code>.</dd> <dt>cutHeight</dt>
<dd>Maximum joining heights that will be considered.</dd> <dt>minSize</dt>
<dd>Minimum cluster size.</dd></dl>

Arguments

Peter Langfelder, <a href="/link/Peter.Langfelder%40gmail.com?package=WGCNA&version=1.73" data-mini-rdoc="WGCNA::Peter.Langfelder@gmail.com">Peter.Langfelder@gmail.com</a>

Author

Fixed-height cut of a dendrogram. — moduleNumber

<dl>

 <dt>dendro</dt>
<dd>a hierarchical clustering dendorgram such as one returned by <code>hclust</code>.</dd>

 <dt>cutHeight</dt>
<dd>Maximum joining heights that will be considered.</dd>

 <dt>minSize</dt>
<dd>Minimum cluster size.</dd>

</dl>

Peter Langfelder, <a href='mailto:Peter.Langfelder@gmail.com'>Peter.Langfelder@gmail.com</a>

moduleNumber: Fixed-height cut of a dendrogram.

Description

Usage

Value

Arguments

Author

Details

See Also