The function produces a matrix of plots containing pairwise scatterplots of given eigengenes, the distribution of their values and their pairwise correlations.
plotMEpairs(
datME,
y = NULL,
main = "Relationship between module eigengenes",
clusterMEs = TRUE,
...)None.
a data frame containing expression data, with rows corresponding to samples and columns to genes. Missing values are allowed and will be ignored.
optional microarray sample trait vector. Will be treated as an additional eigengene.
main title for the plot.
logical: should the module eigengenes be ordered by their dendrogram?
additional graphical parameters to the function pairs
Steve Horvath
The function produces an NxN matrix of plots, where N is the number of eigengenes. In the upper
traingle it plots pairwise scatterplots of module eigengenes (plus the trait y, if given). On the
diagonal it plots histograms of sample values for each eigengene. Below the diagonal, it displays the
pairwise correlations of the eigengenes.