randIndex

Computes the Rand index, a measure of the similarity between two clusterings.

 misc 

Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.

Peter Langfelder

WGCNA

Weighted Correlation Network Analysis

Steve Horvath

Chaochao Cai

Jun Dong

Jeremy Miller

Lin Song

Andy Yip

Bin Zhang

randIndex function

<dl> <dt>tab</dt>
<dd>a matrix giving the cross-tabulation table of two clusterings.</dd> <dt>adjust</dt>
<dd>logical: should the "adjusted" version be computed?</dd></dl>

Arguments

Author

Rand index of two partitions — randIndex

<dl>

 <dt>tab</dt>
<dd>a matrix giving the cross-tabulation table of two clusterings.</dd>

 <dt>adjust</dt>
<dd>logical: should the "adjusted" version be computed?</dd>

</dl>

Rand index of two partitions

randIndex: Rand index of two partitions

Description

Usage

Value

Arguments

Author

References