WhiteStripe (version 2.4.3)

whitestripe_ind_to_mask: WhiteStripe Indices to Mask

Description

Uses WhiteStripe indices to create image mask

Usage

whitestripe_ind_to_mask(img, indices, writeimg = FALSE, ...)

Value

Class of array or nifti depending on img input

Arguments

img

Array or class nifti that is corresponds to dimensions of the images the indices were generated from

indices

indices from whitestripe

writeimg

logical to write image or not

...

arguments to passed to writeNIfTI for writing image

See Also

whitestripe, whitestripe_hybrid

Examples

# \donttest{
lib.loc = tempdir()
if (download_img_data(lib.loc = lib.loc)){
  t1 = oro.nifti::readNIfTI(system.file("T1Strip.nii.gz",
                                        package="WhiteStripe",
                                        lib.loc = lib.loc))
  t2 = oro.nifti::readNIfTI(system.file("T2Strip.nii.gz",
                                        package="WhiteStripe",
                                        lib.loc = lib.loc))
  ind = whitestripe_hybrid(t1, t2)
  mask = whitestripe_ind_to_mask(t1, ind$whitestripe.ind)
  oro.nifti::orthographic(mask)
}
# }