XMRF (version 1.0)

plotGML: Plot Network in GML

Description

Plot the network in graph modeling language (GML).

Usage

plotGML(x, fn = "", th = 1e-06, i = NULL, weight = FALSE, vars = NULL)

Arguments

x

a GMS object.

fn

file name to save the GML file.

th

numeric value, default to 1e-06. To specify the threshold if the estimated coefficient between two variables is to be considered connected.

i

index of the network (along the regularization path) to be plotted. Default to NULL for optimal network.

weight

boolean value to indicate if writing the stability on the inferred edges, default to FALSE.

vars

vector of variable names, default to NULL.