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abctools (version 1.1.7)

Tools for ABC Analyses

Description

Tools for approximate Bayesian computation including summary statistic selection and assessing coverage. See Nunes and Prangle (2015) and Rodrigues, Prangle and Sisson (2018) .

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Install

install.packages('abctools')

Monthly Downloads

553

Version

1.1.7

License

GPL (>= 2)

Issues

0

Pull Requests

0

Stars

6

Forks

3

Maintainer

Matt Nunes

Last Published

September 18th, 2023

Functions in abctools (1.1.7)

saABC

Summary statistic construction by semi-automatic ABC
combmat

table of combinations
recalibrationABC

ABC inference with a recalibration adjustment
semiauto.abc

Performs semi-automatic ABC based on summary statistics regression.
coal

Examples of coalescent data
mincrit

Summary statistics selection by minimizing a posterior sample measure.
AS.test

Test for relative approximate sufficiency between two posterior samples.
rsse

Simulation error measures.
cov.pi

Coverage property diagnostics
stage2

stage2
selectsumm

Generic function for selecting summary statistics in ABC inference.
nn.ent

Works out entropy of a sample.
AS.select

Summary statistics selection using approximate sufficiency.
abctools-package

Tools for ABC analyses
mc.ci

Diagnostic plots for model choice coverage output