aminoacyl

<code>aminoacyl</code> is a list containing the codon counts of 36 genes encoding yeast aminoacyl-tRNA-synthetase(S.Cerevisiae).

datasets

Tools for multivariate data analysis. Several methods are provided for the analysis (i.e., ordination) of one-table (e.g., principal component analysis, correspondence analysis), two-table (e.g., coinertia analysis, redundancy analysis), three-table (e.g., RLQ analysis) and K-table (e.g., STATIS, multiple coinertia analysis). The philosophy of the package is described in Dray and Dufour (2007) <doi:10.18637/jss.v022.i04>.

Aurélie Siberchicot

ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods
in Environmental Sciences

aminoacyl function

<code>aminoacyl</code> is a list containing the 5 following objects:<dl>
 <dt>genes</dt>
<dd>is a vector giving the gene names.</dd>
 
 <dt>localisation</dt>
<dd>is a vector giving the cellular localisation
 of the proteins (M = mitochondrial, C = cytoplasmic,
 I = indetermined, CI = cyto and mito).</dd>
 
 <dt>codon</dt>
<dd>is a vector containing the 64 triplets.</dd> <dt>AA</dt>
<dd>is a factor giving the amino acid names for each codon.</dd> <dt>usage.codon</dt>
<dd>is a dataframe containing the codon counts for each gene.</dd> 
</dl>

Format

Codon usage — aminoacyl

<code>aminoacyl</code> is a list containing the 5 following objects:<dl>
 <dt>genes</dt>
<dd>is a vector giving the gene names.</dd>
 
 <dt>localisation</dt>
<dd>is a vector giving the cellular localisation
 of the proteins (M = mitochondrial, C = cytoplasmic,
 I = indetermined, CI = cyto and mito).</dd>
 
 <dt>codon</dt>
<dd>is a vector containing the 64 triplets.</dd>

 <dt>AA</dt>
<dd>is a factor giving the amino acid names for each codon.</dd>

 <dt>usage.codon</dt>
<dd>is a dataframe containing the codon counts for each gene.</dd>

 
</dl>

aminoacyl: Codon usage

Description

Usage

Arguments

Format

References

Examples