ade4 (version 1.7-22)

microsatt: Genetic Relationships between cattle breeds with microsatellites

Description

This data set gives genetic relationships between cattle breeds with microsatellites.

Usage

data(microsatt)

Format

microsatt is a list of 4 components.

tab

contains the allelic frequencies for 18 cattle breeds (Taurine or Zebu,French or African) and 9 microsatellites.

loci.names

is a vector of the names of loci.

loci.eff

is a vector of the number of alleles per locus.

alleles.names

is a vector of the names of alleles.

References

See a data description at http://pbil.univ-lyon1.fr/R/pdf/pps055.pdf (in French).

Examples

if (FALSE) {
data(microsatt)
fac <- factor(rep(microsatt$loci.names, microsatt$loci.eff))
w <- dudi.coa(data.frame(t(microsatt$tab)), scann = FALSE)
wit <- wca(w, fac, scann = FALSE)
microsatt.ktab <- ktab.within(wit)

plot(sepan(microsatt.ktab)) # 9 separated correspondence analyses
plot(mcoa(microsatt.ktab, scan = FALSE))
plot(mfa(microsatt.ktab, scan = FALSE))
plot(statis(microsatt.ktab, scan = FALSE))
}