seppop: Separate genotypes per population

Description

The function seppop splits a genind object by population, returning a list of objects whose components each correspond to a population. By default, components of the list are genind objects. It can also be a matrix of genotypes corresponding to the x$tab.

Usage

## S3 method for class 'genind':
seppop(x,pop=NULL,truenames=TRUE,res.type=c("genind","matrix"),
  drop=FALSE, treatOther=TRUE)

Arguments

a genind object

pop

a factor giving the population of each genotype in 'x'. If not provided, seeked in x$pop.

truenames

a logical indicating whether true names should be used (TRUE, default) instead of generic labels (FALSE); used if res.type is "matrix".

res.type

a character indicating the type of returned results, a list of genind object (default) or a matrix of data corresponding to the 'tab' slots.

drop

a logical stating whether alleles that are no longer present in a subset of data should be discarded (TRUE) or kept anyway (FALSE, default).

treatOther

a logical stating whether elements of the @other slot should be treated as well (TRUE), or not (FALSE). See details in accessor documentations (pop).

Value

According to 'res.type': a list of genind object (default) or a matrix of data corresponding to the 'tab' slots.

encoding

UTF-8

Examples

Run this code

data(microbov)

obj <- seppop(microbov)
names(obj)

obj$Salers