adegenet (version 2.1.10)

minorAllele: Compute minor allele frequency

Description

This function computes the minor allele frequency for each locus in a genind object. To test if loci are polymorphic, see the function isPoly.

Usage

minorAllele(x)

Arguments

x

a genind object

Author

Thibaut Jombart

See Also

isPoly

Examples

if (FALSE) {

## LOAD DATA
data(nancycats)

## COMPUTE ALLELE FREQUENCIES
x <- nancycats
apply(tab(x, freq=TRUE),2,mean, na.rm=TRUE)

## GET MINOR ALLELE FREQUENCY
m.freq <- minorAllele(x)
m.freq
}