read.genepop

The function <code>read.genepop</code> reads Genepop data files (.gen) and convert
them into a genind object.

manip

Toolset for the exploration of genetic and genomic
data. Adegenet provides formal (S4) classes for storing and handling
various genetic data, including genetic markers with varying ploidy
and hierarchical population structure ('genind' class), alleles counts
by populations ('genpop'), and genome-wide SNP data ('genlight'). It
also implements original multivariate methods (DAPC, sPCA), graphics,
statistical tests, simulation tools, distance and similarity measures,
and several spatial methods. A range of both empirical and simulated
datasets is also provided to illustrate various methods.

Zhian N. Kamvar

adegenet

Exploratory Analysis of Genetic and Genomic Data

Thibaut Jombart

Caitlin Collins

Roman Lustrik

Marie-Pauline Beugin

Brian J. Knaus

Peter Solymos

Vladimir Mikryukov

Klaus Schliep

Tiago Maié

Libor Morkovsky

Ismail Ahmed

Anne Cori

Federico Calboli

RJ Ewing

Frédéric Michaud

Rebecca DeCamp

Alexandre Courtiol

Lindsay V. Clark

Pavel Dimens

read.genepop function

<dl><dt>file</dt>
<dd>a character string giving the path to the file to convert, with
the appropriate extension.</dd>
<dt>ncode</dt>
<dd>an integer indicating the number of characters used to code an allele.</dd>
<dt>quiet</dt>
<dd>logical stating whether a conversion message must be printed
(TRUE,default) or not (FALSE).</dd></dl>

Arguments

Thibaut Jombart <a href="/link/t.jombart%40imperial.ac.uk?package=adegenet&version=2.1.10" data-mini-rdoc="adegenet::t.jombart@imperial.ac.uk">t.jombart@imperial.ac.uk</a>

Author

Reading data from Genepop — read.genepop

<dl>

<dt>file</dt>
<dd>a character string giving the path to the file to convert, with
the appropriate extension.</dd>


<dt>ncode</dt>
<dd>an integer indicating the number of characters used to code an allele.</dd>


<dt>quiet</dt>
<dd>logical stating whether a conversion message must be printed
(TRUE,default) or not (FALSE).</dd>

</dl>

Thibaut Jombart <a href='mailto:t.jombart@imperial.ac.uk'>t.jombart@imperial.ac.uk</a>

Reading data from Genepop

read.genepop: Reading data from Genepop

Description

Usage

Value

Arguments

Author

Details

References

See Also

Examples