adegenet (version 2.1.10)

selPopSize: Select genotypes of well-represented populations

Description

The function selPopSize checks the sample size of each population in a genind object and keeps only genotypes of populations having a given minimum size.

Usage

# S4 method for genind
selPopSize(x,pop=NULL,nMin=10)

Value

A genind object.

Arguments

x

a genind object

pop

a vector of characters or a factor giving the population of each genotype in 'x'. If not provided, seeked from x$pop.

nMin

the minimum sample size for a population to be retained. Samples sizes strictly less than nMin will be discarded, those equal to or greater than nMin are kept.

Author

Thibaut Jombart

See Also

seploc, repool

Examples

if (FALSE) {
data(microbov)

table(pop(microbov))
obj <- selPopSize(microbov, n=50)

obj
table(pop(obj))
}