s.logo: 2-D scatter plot with logos (bitmap objects)

Description

This function represents a two dimensional scatter plot associating logos with points.

Usage

s.logo(dfxy, logos, xax = 1, yax = 2, facets = NULL, 
  plot = TRUE, storeData = TRUE, add = FALSE, pos = -1, ...)

Value

An object of class ADEg (subclass S2.logo) or ADEgS (if add is TRUE and/or if facets or vectors for xax/yax are used).

The result is displayed if plot is TRUE.

Arguments

dfxy: a data frame used to produce the plot
logos: a list containing the picture to use for each point
xax: an integer (or a vector) indicating which column(s) of dfxy is(are) plotted on the x-axis
yax: an integer (or a vector) indicating which column(s) of dfxy is(are) plotted on the y-axis
facets: a factor splitting the rows of dfxy so that subsets of the data are represented on different sub-graphics
plot: a logical indicating if the graphics is displayed
storeData: a logical indicating if the data should be stored in the returned object. If FALSE, only the names of the data arguments are stored
add: a logical. If TRUE, the graphic is superposed to the graphics already plotted in the current device
pos: an integer indicating the position of the environment where the data are stored, relative to the environment where the function is called. Useful only if storeData is FALSE
...: additional graphical parameters (see adegpar and trellis.par.get)

Author

Alice Julien-Laferriere, Aurelie Siberchicot aurelie.siberchicot@univ-lyon1.fr and Stephane Dray

Examples

Run this code

data(ggtortoises, package = "ade4")
g1 <- s.logo(ggtortoises$pop, 
  ggtortoises$ico[as.character(ggtortoises$pop$carap)], 
  pori.incl = FALSE, ppoints.cex = 0.5)
g1 <- s.label(ggtortoises$pop, add = TRUE, plabels.boxes.alpha = 0)

g2 <- s.label(ggtortoises$misc, pgrid.draw = FALSE, 
  porigin.include = FALSE, paxes.draw = FALSE, 
  Sp = ggtortoises$Spatial, pback.col = "lightblue", pSp.col = "white")
g2 <- s.logo(ggtortoises$pop, ggtortoises$ico[as.character(ggtortoises$pop$carap)], 
  ppoints.cex = 0.5, add = TRUE)

data(capitales, package = "ade4")
g3 <- s.logo(capitales$xy[sort(rownames(capitales$xy)), ], capitales$logo, 
  Sp = capitales$Spatial, pback.col = "lightblue", pSp.col = "white", 
  pgrid.draw = FALSE)