normalize.contrasts

normalize.AffyBatch.contrasts

an <code><a rd-options="" href="/link/AffyBatch-class?package=affy&version=1.50.0" data-mini-rdoc="affy::AffyBatch-class">AffyBatch-class</a></code> object.

abatch

parameter to be passed to the function
    <code><a rd-options="stats" href="/link/loess?package=affy&version=1.50.0&to=stats" data-mini-rdoc="stats::loess">loess</a></code>.

span

choose.subset

Integer. Number of probesets to use in each subset.

subset.size

verbose

family

a string specifying how the normalization should be applied.

type


  Scale chip objects in an <code><a rd-options="" href="/link/AffyBatch-class?package=affy&version=1.50.0" data-mini-rdoc="affy::AffyBatch-class">AffyBatch-class</a></code>.


manip

The package contains functions for exploratory
oligonucleotide array analysis. The dependence on tkWidgets
only concerns few convenience functions. 'affy' is fully
functional without it.

Rafael A Irizarry

affy

Methods for Affymetrix Oligonucleotide Arrays

normalize.contrasts function

an <code><a href="AffyBatch-class" rd-options="">AffyBatch-class</a></code> object.

parameter to be passed to the function
    <code><a href="loess" rd-options="stats">loess</a></code>.

Scale chip objects in an <code><a href="AffyBatch-class" rd-options="">AffyBatch-class</a></code>.

normalize.contrasts: Normalize intensities using the contrasts method

Description

Usage

Arguments

Value

See Also