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agridat (version 1.23)

agridat: Datasets from agricultural experiments

Description

This package contains datasets from publications relating to agriculture, including field crops, tree crops, animal studies, and a few others.

Arguments

Author

Kevin Wright, with support from many people who granted permission to include their data in this package.

Details

If you use these data, please cite both the agridat package and the original source of the data.

Abbreviations in the 'other' column include: xy = coordinates, pls = partial least squares, rsm = response surface methodology, row-col = row-column design, ts = time series,

Uniformity trials with a single genotype

namedimensionsothermodel
ansari.wheat.uniformity96 x 8xy
bailey.cotton.uniformity8 x 20xy, 5 envts
baker.barley.uniformity3 x 19xy, 10 years
baker.strawberry.uniformity10 x 50xy
baker.wheat.uniformity12 x 12xy
bancroft.peanut.uniformity6 x 18xy, 2 blocks
batchelor.apple.uniformity8 x 28xy
batchelor.lemon.uniformity14 x 16xy
batchelor.navel1.uniformity20 x 50xy
batchelor.navel2.uniformity15 x 33xy
batchelor.valencia.uniformity12 x 20xy
batchelor.walnut.uniformity10 x 28xy
bose.multi.uniformity15 x 26xy, 3 years
bradley.multi.uniformity10 x 11xy
bryan.corn.uniformity6 x 48xy
christidis.cotton.uniformity16 x 16xy, 4 blocks
christidis.wheat.uniformity12 x 24xy
coombs.rice.uniformity3 x 18xy
dasilva.soybean.uniformity24 x 48xy
davies.pasture.uniformity19 x 40xy
day.wheat.uniformity31 x 100xy
draper.safflower.uniformity18 x 16xy, 2 exptsmith
eden.tea.uniformity12 x 12xy
evans.sugarcane.uniformity142 x 5xy
forster.wheat.uniformity10 x 16xy
garber.multi.uniformity45 x 6xy, 2 years/crops
gomez.rice.uniformity18 x 36xyaov,smith
goulden.barley.uniformity48 x 48xy
harris.multi.uniformity2 x 23xy, 23 cropscorrgram
hansen.multi.uniformity6 x 5, 16 x 8xy, 4-5 yrsplom
hartman.tomato.uniformity12 x 32xy
heath.cabbage.uniformity6 x 8xy
heath.radish.uniformity10 x 10xy
holtsmark.timothy.uniformity6 x 40xy
igue.sugarcane.uniformity36 x 42xy
immer.sugarbeet.uniformity10 x 60xy, 3 traits, 2 yr
iyer.wheat.uniformity25 x 80xy
kadam.millet.uniformity8 x 20xy, 2 expts
kalamkar.potato.uniformity6 x 96xy
kalamkar.wheat.uniformity16 x 80xy, 2 traits
kempton.barley.uniformity7 x 28xy
kerr.sugarcane.uniformity12 x 12xy, 4 fields
khan.brassica.uniformity18 x 18xy, 2 fields
khin.rice.uniformity30 x 36xy
kiesselbach.oats.uniformity3 x 69xy
kristensen.barley.uniformity22 x 11xy
kulkarni.sorghum.uniformity4 x 40xy, 3 years
lander.multi.uniformity5 x 39xy, 4 years
laycock.tea.uniformity6 x 9xy, 2 locations
lehmann.millet.uniformity6 x 22xy, 3 years
lessman.sorghum.uniformity46 x 60xy
li.millet.uniformity6 x 100xy
loesell.bean.uniformity21 x 90xy
lord.rice.uniformity5 x 14xy, 8 fields
love.cotton.uniformity16 x 10xy
lyon.potato.uniformity34 x 6xy
magistad.pineapple.uniformity5 x 5xy
masood.rice.uniformity12 x 24xy
mckinstry.cotton.uniformity24 x 20xy
mercer.mangold.uniformity10 x 20xy
mercer.mangold.uniformity10 x 20xy
mercer.wheat.uniformity25 x 20xy, 2 traitsspplot
montgomery.wheat.uniformity14 x 16xy, 2 yearslm
moore.polebean.uniformity12 x 12xy
moore.bushbean.uniformity24 x 24xy
moore.sweetcorn.uniformity24 x 12xy
moore.carrot.uniformity24 x 12xy
moore.springcauliflower.uniformity12 x 20xy
moore.fallcauliflower.uniformity12 x 20xy
nagai.strawberry.uniformity18 x 24xy
nagai.strawberry.uniformity18 x 24xy
nair.turmeric.uniformity72 x 12xy
narain.sorghum.uniformity10 x 16xy
nonnecke.peas.uniformity15 x 18xy, 2 traits
nonnecke.sweetcorn.uniformity32 x 18xy, 3 loc
obsi.potato.uniformity63 x 26, 49 x 19xy
odland.soybean.uniformity25 x 42xy
odland.soyhay.uniformity28 x 55xy
paez.coffee.uniformity32 x 36xy, 5 yr
panse.cotton.uniformity32 x 40xy
parker.orange.uniformity10 x 27xy, 6 yr
piepho.barley.uniformity30 x 36xy
polson.safflower.uniformity52 x 33xysmith
robinson.peanut.uniformity16 x 36xy
saunders.maize.uniformity5 x 300xy, 2 year
sawyer.multi.uniformity8 x 6xy, 3 year
sayer.sugarcane.uniformity8 x 136, 8 x 121xy, 2 year
shafi.tomato.uniformity10 x 20xy
smith.beans.uniformity18 x 12, 16 x 15xy, 2 yr, 2 crops
smith.corn.uniformity6 x 20xy, 3 yearsrgl
smith.wheat.uniformity36 x 30xy, 2 traits
stephens.sorghum.uniformity100 x 20xy
stickler.sorghum.uniformity20 x 20xy, 4 expts, 2 years
strickland.apple.uniformity11 x 18xy
strickland.grape.uniformity5 x 31xy
strickland.peach.uniformity8 x 18xy
strickland.tomato.uniformity30 x 6xy
summerby.multi.uniformity35 x 5xy5 years
wassom.brome.uniformity36 x 36xy, 3 expts
wiebe.wheat.uniformity12 x 125xymedianpolish, loess
wiedemann.safflower.uniformity54 x 33xysmith
williams.barley.uniformity48 x 15xyloess
williams.cotton.uniformity24 x 12xyloess
wyatt.multi.uniformity43 x 3xy

Yield monitor

namerepsyearstrtothermodel
gartner.cornxy,ym
lasrosas.corn326xy,ymlm
kayad.alfalfa4xy,ym

Animals

namegenyearstrtothermodel
alwan.lamb342ordinalclmm
becker.chicken5,12heritabilitylmer
crampton.pig52 covlm
brandt.switchback102aov
depalluel.sheep44latin
diggle.cow4ts
foulley.calvingordinalpolr
goulden.eggscontrolchart
harvey.lsmeans3,3lm
harville.lamb5lmer
henderson.milkfatnls,lm,glm,gam
holland.arthropods5
ilri.sheep46diallellmer, asreml
kenward.cattle2asreml
lucas.switchback123aov
mead.lamb33glm
patterson.switchback124aov
urquhart.feedlot113lm
woodman.pig3covlm
zuidhof.broilerts

Trees

namegenlocrepsyearstrtothermodel
box.corkrepeatedradial, asreml
devries.pine43,3xy,graecoaov
harris.wateruse22repeatedasreml,lme
hanover.whitepine7*44heritabilitylmer
johnson.douglasfirxy
lavoranti.eucalyptus707svd
pearce.apple46covlm,lmer
williams.trees3762

Field and horticulture crops

namegenlocrepsyearstrtothermodel
acorsi.grayleafspot36925nonnormalgnm,ammi
adugna.sorghum28135
aastveit.barley159yr*gen~yr*trtpls
allcroft.lodging327percenttobit
archbold.apple2524split-splitlmer
ars.earlywhitecorn966096 traitsdotplot
australia.soybean58424-way, 6 traitsbiplot
bachmaier.nitrogen42,11quadratic lm
barrero.maize847164116asreml
battese.survey121-52lmer
beall.webworms152,2xy, split-blockglm poisson,nb
beaven.barley820xy
belamkar.augmented2738xy, incblockasreml
besag.bayesian753xyasreml
besag.beans64*6xylm,competition
besag.checks2xy
besag.elbatan503xylm, gam
besag.endivexy,binaryautologistic
besag.met6463xy, incblockasreml, lme
besag.triticale32,2,3xylm, asreml
bliss.borers4glm
blackman.wheat1272biplot
bond.diallel6*69diallel
bridges.cucumber424xy, latin, heteroasreml
brandle.rape593lmer
buntaran.wheat30182alphaasreml
burgueno.alpha153xy, alphaasreml,lmer
burgueno.rowcol642xy, row-colasreml,lmer
burgueno.unreplicated280xyasreml
butron.maize4932diallel,pedigreebiplot,asreml
caribbean.maize1743
carmer.density84nls,nlme
carlson.germination158glm
chakravertti.factorial333,5,3,3factorialaov
chinloy.fractionalfactorial91/3 3^5 = 3,3,3,3xy,factorialaov
christidis.competition95xy
cochran.beets67
cochran.bib1313bibaov, lme
cochran.crd7xy, crdaov
cochran.factorial22,2,2,2 = 2^4factorialaov
cochran.latin66xy, latinaov
cochran.lattice516xy, latinlmer
cochran.wireworms55xy, latinglm
cochran.eelworms45xyaov
connolly.potato204xy, competitionlm
cornelius.maize920svd
corsten.interaction207
cramer.cucumber8pathcoef
crossa.wheat1825ammi
crowder.seeds2212glm,INLA,jags
cox.stripsplit43,4,2split-blockaov
cullis.earlygen532xyasreml
damesa.maize2243xy,incblock,twostageasreml
dasilva.maize5593
darwin.maize122t.test
davidian.soybean23nlme
denis.missing526lme
denis.ryegrass217aov
digby.jointregression10174lm
durban.competition363xy, competitionlm
durban.rowcol2722xylm, gam, asreml
durban.splitplot7042xylm, gam, asreml
eden.potato434-12xy, rcb, latinaov
eden.nonnormal44aov
edwards.oats80537
engelstad.nitro256rsm1nls quadratic plateau
fan.stability131023-waystability
federer.diagcheck122xylm, lmer, asreml
federer.tobacco87xylm
fisher.barley562
fisher.latin55xy,latinlm
fox.wheat2214lm
gathmann.bt28tost
gauch.soy77412ammi
george.wheat2119415
giles.wheat19132 traitsgnm
gilmour.serpentine1083xy, serpentineasreml
gilmour.slatehall256xyasreml
gomez.fractionalfactorial21/2 2^6 = 2,2,2,2,2,2xy,factoriallm
gomez.groupsplit4532xy, 3 gen groupsaov
gomez.heteroskedastic353hetero
gomez.multilocsplitplot233rsm1,nitroaov, lmer
gomez.nitrogen48aov, contrasts
gomez.nonnormal149log10lm
gomez.nonnormal2143sqrtlm
gomez.nonnormal3123arcsinlm
gomez.seedrate46ratelm
gomez.splitplot.subsample38,4subsampleaov
gomez.splitsplit33xy, nitro, mgmtaov, lmer
gomez.stripplot63xy, nitroaov
gomez.stripsplitplot63xy, nitroaov
gomez.wetdry325nitrolmer
gotway.hessianfly164xylmer
goulden.latin55xy, latinlm
goulden.splitsplit242*5xy, splitaov
graybill.heteroskedastic413hetero
gregory.cotton24*3*2*2polar
grover.diallel46*6diallellmDiallel
grover.rcb.subsample429subsampleaov
gumpertz.pepperxyglm
hadasch.lettuce8933markersasreml
hanks.sprinkler33xyasreml
hayman.tobacco822diallelasreml
hazell.vegetables46linprog
heady.fertilizer29*9rsm2lm,rgl
hernandez.nitrogen54rsm1lm, nls
hildebrand.systems144asreml
holshouser.splitstrip442*4rsm1,poplmer
huehn.wheat2010huehn
hughes.grapes36binomiallmer, aod, glmm
hunter.corn1231rsm1xyplot
ivins.herbs1362 traitslm, friedman
jansen.apple343binomialglmer
jansen.carrot1632binomialglmer
jansen.strawberry124ordinalmosaicplot
jayaraman.bamboo623heritabilitylmer
jenkyn.mildew94lm
john.alpha243xy, alphalm, lmer
johnson.blight2logistic
kang.maize17432,4
kang.peanut10154gge
karcher.turfgrass42,4ordinalpolr
keen.potatodamage642,3,8ordinalmosaicplot,clmm
kempton.competition363xy, competitionlme AR1
kempton.rowcol352xy, row-collmer
kling.augmented536xy, augmentedlmer
kempton.slatehall256xyasreml, lmer
kirk.potato2115xy
lee.potatoblight337411xy, ordinal, repeated
lehner.soybeanmold35411metafor, lmer
lillemo.wheat24137qqmedpolish, huehn
lin.superiority3312superiority
lin.unbalanced3318superiority
linder.wheat974gge
little.splitblock44,5xy, split-blockaov
lonnquist.maize11diallelasreml
lyons.wheat124
lu.stability56huehn
mcconway.turnip242,4heteroaov, lme
mcleod.barley86aggregate
mead.cauliflower2poissonglm
mead.cowpea.maize3,234intercrop
mead.germination44,4binomialglm
mead.strawberry84
mead.turnip35,4aov
miguez.biomass34
minnesota.barley.weather610
minnesota.barley.yield22610dotplot
omer.sorghum1864jags
onofri.winterwheat837ammi
ortiz.tomato151816env*gen~env*covpls
pacheco.soybean1811ammi
payne.wheat206rotationasreml
pederson.lettuce.repeated183nlme
perry.springwheat2854gainlm,lmer,asreml
petersen.sorghum.cowpea2474intercrop
piepho.cocksfoot257mumm
ratkowsky.onionslm
reid.grasses4321nlme SSfpl
riddle.wheat2552xy, latinaov
ridout.appleshoots302,4zipzeroinfl
rothamsted.brussels46
rothamsted.oats89rcb
ryder.groundnut54xy, rcblm
salmon.bunt10220betareg
senshu.rice40lm,Fieller
shafii.rapeseed61433biplot
shaw.oats13253aov
sharma.met7332FinlayWilkinson
silva.cotton555 traitsglm,poisson
sinclair.clover5,5rsm2,mitzerlichnls,rgl
snedecor.asparagus444split-plot, antedependence
snijders.fusarium1734percentglm/gnm,gammi
steptoe.morex.pheno1521610 traits
steptoe.morex.geno150223 markers, qtl
streibig.competition23glm
stroup.nin564xyasreml
stroup.splitplot4asreml, MCMCglmm
student.barley2516lmer
tai.potato832tai
talbot.potato912gen*env~gen*trtpls
tesfaye.millet4722-324xyasreml
theobald.barley3525rsm1
theobald.covariate1075covjags
thompson.cornsoy533repeated measuresaov
vaneeuwijk.fusarium20473-wayaov
vaneeuwijk.drymatter6473-wayaov,lmer
vaneeuwijk.nematodes11nonnormal,poissongnm, gammi
vargas.wheat176gen*yr~gen*trt, yr*gen~yr*covpls
vargas.wheat287env*gen~env*covpls
vargas.txe1024yr*trt~yr*covpls
verbyla.lupin98327rsm1, xy, densityasreml
vold.longterm194rsm1nls,nlme
vsn.lupin33363xyasreml
wedderburn.barley109percentglm/gnm
weiss.incblock316xy,incblockasreml
weiss.lattice494xy,latticelm,asreml
welch.bermudagrass4,4,4rsm3, factoriallm, jags
wheatley.carrot311glm-binomial
yan.winterwheat189gge,biplot
yang.barley618biplot
yates.missing103^2 = 3,3factoriallm, pca
yates.oats36xy,split,nitrolmer

Time series

nameyearstrtothermodel
byers.applelme
broadbalk.wheat7417
hessling.argentina30temp,precip
kreusler.maize45plant growth
lambert.soiltemp17
nass.barley146
nass.corn146
nass.cotton146
nass.hay104
nass.sorghum93
nass.wheat146
nass.rice117
nass.soybean88
walsh.cottonprice34cor

Other

namemodel
cate.potassiumcate-nelson
cleveland.soilloess 2D
harrison.priorsnls, prior
nebraska.farmincomechoropleth
pearl.kernelschisq
stirret.borerslm, 4 trt
turner.herbicideglm, 4 trt
usgs.herbicidesnon-detect
wallace.iowalandlm, choropleth
waynick.soilspatial, nitro/carbon

Summaries:

Diallel experiments:

namegenlocrepstrtmodel
bond.diallel6*69
butron.maize493biplot,asreml
grover.diallel46*6lmDiallel
hayman.tobacco82asreml
ilri.sheep46
lonnquist.maize11asreml

Factorial experiments:

namegenlocrepsyearstrtothermodel
chakravertti.factorial333,5,3,3factorialaov
chinloy.fractionalfactorial91/3 3^5 = 3,3,3,3xy,factorialaov
cochran.factorial22,2,2,2 = 2^4factorialaov
gomez.fractionalfactorial21/2 2^6 = 2,2,2,2,2,2xy,factoriallm
welch.bermudagrass4,4,4rsm3, factoriallm, jags
yates.missing103^2 = 3,3factoriallm, pca

Multi-environment trials with multi-genotype,loc,rep,year:

namegenlocrepsyearstrtothermodel
barrero.maize847164116asreml
edwards.oats80537
gauch.soy77412ammi
george.wheat2119415
shafii.rapeseed61433biplot
shaw.oats13253aov
tesfaye.millet4722-324xy,FAasreml
verbyla.lupin98327rsm1, xy, densityasreml

Data with markers: hadasch.lettuce.markers, steptoe.morex.geno

Data with pedigree: butron.maize

References

J. White and Frits van Evert. (2008). Publishing Agronomic Data. Agron J. 100, 1396-1400. https://doi.org/10.2134/agronj2008.0080F