baseTheme

<code>baseTheme</code> defines common ggplot theme settings for plotting.

Provides methods for high-throughput adaptive immune
receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In
particular, immunoglobulin (Ig) sequence lineage reconstruction,
lineage topology analysis, diversity profiling, amino acid property
analysis and gene usage.
Citations:
Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>,
Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.

Jason Vander Heiden

alakazam

Immunoglobulin Clonal Lineage and Diversity Analysis

Susanna Marquez

Namita Gupta

Nima Nouri

Ruoyi Jiang

Julian Zhou

Kenneth Hoehn

Daniel Gadala-Maria

Edel Aron

Steven Kleinstein

baseTheme function

<dl><dt>sizing</dt>
<dd>defines the style and sizing of the theme. One of 
<code>c("figure", "window")</code> where <code>sizing="figure"</code> is appropriately
sized for pdf export at 7 to 7.5 inch width, and <code>sizing="window"</code>
is sized for an interactive session.</dd></dl>

Arguments

Standard ggplot settings — baseTheme

<dl>

<dt>sizing</dt>
<dd>defines the style and sizing of the theme. One of 
<code>c("figure", "window")</code> where <code>sizing="figure"</code> is appropriately
sized for pdf export at 7 to 7.5 inch width, and <code>sizing="window"</code>
is sized for an interactive session.</dd>

</dl>

Standard ggplot settings

baseTheme: Standard ggplot settings

Description

Usage

Value

Arguments

See Also