alakazam (version 1.3.0)

getAAMatrix: Build an AA distance matrix

Description

getAAMatrix returns a Hamming distance matrix for IUPAC ambiguous amino acid characters.

Usage

getAAMatrix(gap = 0)

Value

A matrix of amino acid character distances with row and column names indicating the character pair.

Arguments

gap

value to assign to characters in the set c("-", ".").

See Also

Creates an amino acid distance matrix for seqDist. See getDNAMatrix for nucleotide distances.

Examples

getAAMatrix()