A class to present data for HomologGene data of a matching
sequence
Arguments
Objects from the Class
Objects can be created by calls of the form new("homoData", ...).
Slots
homoOrg:
Object of class "character" the
scientific name of the organism of interest
homoLL:
Object of class "numeric" the LocusLink
id of the gene of interest
homoType:
Object of class "character" the type of
similarity. Valid values include B - a recipiprocal best best
between 3 or more organisms, b - a reciprocal best match, and c -
a curated homology relationship
homoPS:
Object of class "numeric" percent
similarity value
homoURL:
Object of class "character" the URL for
curated homology relationship
homoACC:
Object of class "character" the
accession number
homoHGID:
Object of class "numeric" the
internal HomologGeneID
Methods
homoPS
signature(object = "homoData"): the get function for
slot homoPS
homoLL
signature(object = "homoData"): the get function
for slot homoLL
homoOrg
signature(object = "homoData"): the get function
for slot homoOrg
homoType
signature(object = "homoData"): the get function
for slot homoType
homoURL
signature(object = "homoData"): the get function
for slot homoURL
homoACC
signature(object = "homoData"): the get function
for slot homoACC
homoHGID
signature(object = "homoHGID"): the get
function for slot homoHGID