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ape (version 5.8)

DNAbin2indel: Recode Blocks of Indels

Description

This function scans a set of aligned DNA sequences and returns a matrix with information of the localisations and lengths on alignment gaps.

Usage

DNAbin2indel(x)

Value

a numeric matrix.

Arguments

x

an object of class "DNAbin".

Author

Emmanuel Paradis

Details

The output matrix has the same dimensions than the input one with, either a numeric value where an alignment gap starts giving the length of the gap, or zero. The rownames are kept.

See Also

DNAbin, as.DNAbin, del.gaps, seg.sites, image.DNAbin, checkAlignment