ape-methods

<p>The generics <code>ape::Nedge()</code>, <code>ape::Nnode()</code>, and <code>ape::Ntip()</code> can be used
directly on objects of class aphylo, aphylo_estimates, multiAphylo</p>

Implements a parsimonious evolutionary model to analyze and
predict gene-functional annotations in phylogenetic trees as described in Vega
Yon et al. (2021) <doi:10.1371/journal.pcbi.1007948>. Focusing on
computational efficiency, 'aphylo' makes it possible to estimate pooled
phylogenetic models, including thousands (hundreds) of annotations (trees) in
the same run. The package also provides the tools for visualization of
annotated phylogenies, calculation of posterior probabilities (prediction)
and goodness-of-fit assessment featured in Vega Yon et al. (2021).

George Vega Yon

aphylo

Statistical Inference and Prediction of Annotations in
Phylogenetic Trees

ape-methods: Available methods from the APE package

Description

Arguments

Value

See Also

Examples