multiAphylo

c.aphylo

print.multiAphylo

This is equivalent to what ape::c.phylo does.

Implements a parsimonious evolutionary model to analyze and
predict gene-functional annotations in phylogenetic trees as described in Vega
Yon et al. (2021) <doi:10.1371/journal.pcbi.1007948>. Focusing on
computational efficiency, 'aphylo' makes it possible to estimate pooled
phylogenetic models, including thousands (hundreds) of annotations (trees) in
the same run. The package also provides the tools for visualization of
annotated phylogenies, calculation of posterior probabilities (prediction)
and goodness-of-fit assessment featured in Vega Yon et al. (2021).

George Vega Yon

aphylo

Statistical Inference and Prediction of Annotations in
Phylogenetic Trees

National
Cancer Institute (NCI) 

USC Biostatistics 

multiAphylo function

<dl><dt>...</dt>
<dd>One or several object of class <code>aphylo</code> or <code>multiAPhylo</code>. Ignored
in the case of <code>print.multiAphylo</code>.</dd>
<dt>x</dt>
<dd>An object of class <code>multiAphylo</code></dd></dl>

Arguments

Building Lists of Annotated Trees — multiAphylo

<dl>

<dt>...</dt>
<dd>One or several object of class <code>aphylo</code> or <code>multiAPhylo</code>. Ignored
in the case of <code>print.multiAphylo</code>.</dd>


<dt>x</dt>
<dd>An object of class <code>multiAphylo</code></dd>

</dl>

multiAphylo: Building Lists of Annotated Trees

Description

Usage

Value

Arguments

Examples