aphylo (version 0.3-3)

plot_logLik: Plot Log-Likelihood function of the model

Description

Plot Log-Likelihood function of the model

Usage

plot_logLik(x, sets, ...)
# S3 method for aphylo
plot_logLik(x, sets, ...)
# S3 method for formula
plot_logLik(x, sets, ...)
# S3 method for aphylo_estimates
plot_logLik(x, sets, ...)

Value

NULL (invisible). Generates a plot of the loglikelihood of the model.

Arguments

x

An object of class aphylo()

sets

(optional) Character matrix of size 2 x # of combinations. contains the names of the pairs to plot. If nothing passed, the function will generate all possible combinations as combn(names(params), 2).

...

Aditional parameters to be passed to plotfun.

Examples

# Loading data
data(fakeexperiment)
data(faketree)
O <- new_aphylo(fakeexperiment[,2:3], tree = as.phylo(faketree))

# Baseline plot (all parameters but Pi)
plot_logLik(O)

# No psi parameter
plot_logLik(O ~ mu_d + Pi + eta)