aphylo-package

Statistical Inference in Annotated Phylogenetic Trees

Implements a parsimonious evolutionary model to analyze and
predict gene-functional annotations in phylogenetic trees as described in Vega
Yon et al. (2021) <doi:10.1371/journal.pcbi.1007948>. Focusing on
computational efficiency, 'aphylo' makes it possible to estimate pooled
phylogenetic models, including thousands (hundreds) of annotations (trees) in
the same run. The package also provides the tools for visualization of
annotated phylogenies, calculation of posterior probabilities (prediction)
and goodness-of-fit assessment featured in Vega Yon et al. (2021).

George Vega Yon

aphylo

Statistical Inference and Prediction of Annotations in
Phylogenetic Trees

National
Cancer Institute (NCI) 

USC Biostatistics 

aphylo-package function

Maintainer: George Vega Yon <a href="/link/g.vegayon%40gmail.com?package=aphylo&version=0.3-4" data-mini-rdoc="aphylo::g.vegayon@gmail.com">g.vegayon@gmail.com</a> (<a href="https://orcid.org/0000-0002-3171-0844">ORCID</a>)
Other contributors:<ul>
<li>National Cancer Institute (NCI) (Grant Number 5P01CA196569-02) [funder]</li>
<li>USC Biostatistics [copyright holder]</li>
</ul>

Author

Statistical Inference in Annotated Phylogenetic Trees — aphylo-package

Maintainer: George Vega Yon <a href='mailto:g.vegayon@gmail.com'>g.vegayon@gmail.com</a> (<a href='https://orcid.org/0000-0002-3171-0844'>ORCID</a>)
Other contributors:<ul>
<li>National Cancer Institute (NCI) (Grant Number 5P01CA196569-02) [funder]</li>
<li>USC Biostatistics [copyright holder]</li>
</ul>

aphylo-package: Statistical Inference in Annotated Phylogenetic Trees

Description

Arguments

Author

See Also