aqp (version 1.18)

soilColorSignature: Soil Profile Color Signatures

Description

Generate a color signature for each soil profile in a collection.

Usage

soilColorSignature(spc, r = "r", g = "g", b = "b", 
method='colorBucket', pam.k=3, RescaleLightnessBy = 1, useProportions=TRUE,
pigmentNames=c('.white.pigment', '.red.pigment', '.green.pigment', 
'.yellow.pigment', '.blue.pigment'))

Arguments

spc

a SoilProfileCollection object

r

horizon level attribute containing soil color (sRGB) red values

g

horizon level attribute containing soil color (sRGB) green values

b

horizon level attribute containing soil color (sRGB) blue values

method

algorithm used to compute color signature, `colorBucket`, `depthSlices`, or `pam`

pam.k

number of classes to request from cluster::pam()

RescaleLightnessBy

rescaling factor for CIE LAB L-coordinate

useProportions

use proportions or quantities, see details

pigmentNames

names for resulting pigment proportions or quantities

Value

For the `colorBucket` method, a data.frame object containing:

id column

set according to idname(spc)

.white.pigment

proportion or quantity of CIE LAB L-values

.red.pigment

proportion or quantity of CIE LAB positive A-values

.green.pigment

proportion or quantity of CIE LAB negative A-values

.yellow.pigment

proportion or quantity of CIE LAB positive B-values

.blue.pigment

proportion or quantity of CIE LAB negative B-values

Column names can be adjusted with the pigmentNames argument.

For the `depthSlices` method ...

For the `pam` method ...

Details

http://ncss-tech.github.io/AQP/aqp/soil-color-signatures.html

References

https://en.wikipedia.org/wiki/Lab_color_space

See Also

munsell2rgb

Examples

# NOT RUN {
# trivial example, not very interesting
data(sp1)
depths(sp1) <- id ~ top + bottom

# convert Munsell -> sRGB triplets
rgb.data <- munsell2rgb(sp1$hue, sp1$value, sp1$chroma, return_triplets = TRUE)
sp1$r <- rgb.data$r
sp1$g <- rgb.data$g
sp1$b <- rgb.data$b

# extract color signature
pig <- soilColorSignature(sp1)
# }