AffymetrixFileSetReporter

Package: aroma.affymetrix 
Class AffymetrixFileSetReporter 
<code>Object</code> 
<code>~~|</code> 
<code>~~+--</code><code>GenericReporter</code> 
<code>~~~~~~~|</code> 
<code>~~~~~~~+--</code><code>AffymetrixFileSetReporter</code> 
Directly known subclasses: 
AffymetrixCelSetReporter, SpatialReporter 
public abstract static class AffymetrixFileSetReporter 
extends GenericReporter

classes

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

AffymetrixFileSetReporter function

<dl> <dt>set</dt>
<dd>An <code>AffymetrixFileSet</code> object.</dd> <dt>...</dt>
<dd>Arguments passed to <code>GenericReporter</code>.</dd> <dt>.setClass</dt>
<dd>The name of the class of the input set.</dd></dl>

Arguments

Methods: <table class="table">
<tr><td></td><td><code>getInputName</code></td><td>-</td></tr>
<tr><td></td><td><code>getInputTags</code></td><td>-</td></tr>
</table>Methods inherited from GenericReporter: 
as.character, getAlias, getAsteriskTags, getFullName, getInputName, getInputTags, getMainPath, getName, getPath, getReportSet, getRootPath, getTags, process, setAlias, setup
Methods inherited from Object: 
$, $&lt;-, [[, [[&lt;-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Fields and Methods

Author

Package: aroma.affymetrix 
Class AffymetrixFileSetReporter 
<code>Object</code> 
<code>~~|</code> 
<code>~~+--</code><code>GenericReporter</code> 
<code>~~~~~~~|</code> 
<code>~~~~~~~+--</code><code>AffymetrixFileSetReporter</code> 
Directly known subclasses: 
AffymetrixCelSetReporter, SpatialReporter 
public abstract static class AffymetrixFileSetReporter 
extends GenericReporter

The AffymetrixFileSetReporter class — AffymetrixFileSetReporter

<dl>

 <dt>set</dt>
<dd>An <code>AffymetrixFileSet</code> object.</dd>

 <dt>...</dt>
<dd>Arguments passed to <code>GenericReporter</code>.</dd>

 <dt>.setClass</dt>
<dd>The name of the class of the input set.</dd>

</dl>

Methods: <table class='table'>
<tr><td></td><td><code>getInputName</code></td><td>-</td></tr>
<tr><td></td><td><code>getInputTags</code></td><td>-</td></tr>
</table>



Methods inherited from GenericReporter: 
as.character, getAlias, getAsteriskTags, getFullName, getInputName, getInputTags, getMainPath, getName, getPath, getReportSet, getRootPath, getTags, process, setAlias, setup
Methods inherited from Object: 
$, $&lt;-, [[, [[&lt;-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

AffymetrixFileSetReporter: The AffymetrixFileSetReporter class

Description

Usage

Arguments

Fields and Methods

Author

	`getInputName`	-
	`getInputTags`	-