Package: aroma.affymetrix
Class ChipEffectTransform
Object
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~~+--ParametersInterface
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~~~~~~~+--AromaTransform
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~~~~~~~~~~~~+--Transform
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~~~~~~~~~~~~~~~~~+--ChipEffectTransform
Directly known subclasses:
AdditiveCovariatesNormalization, ChipEffectGroupMerge, FragmentEquivalentClassNormalization, FragmentLengthNormalization, GcContentNormalization, GcContentNormalization2, SnpChipEffectGroupMerge
public abstract static class ChipEffectTransform
extends Transform
This abstract class represents a transform that transforms chip-effect estimates obtained from probe-level modeling.
ChipEffectTransform(dataSet=NULL, ...)
The input data set as an ChipEffectSet.
Arguments passed to the constructor of Transform.
Methods:
No methods defined.
Methods inherited from Transform:
getOutputDataSet, getOutputFiles
Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags
Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString
Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis
Henrik Bengtsson
Subclasses must implement the process() method.