FirmaModel: The FirmaModel class

Description

Package: aroma.affymetrix
Class FirmaModel

Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--Model
~~~~~~~~~~~~|
~~~~~~~~~~~~+--UnitModel
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--FirmaModel

Directly known subclasses:

public abstract static class FirmaModel
extends UnitModel

This class represents the FIRMA (Finding Isoforms using RMA) alternative splicing model.

Usage

FirmaModel(rmaPlm=NULL, summaryMethod=c("median", "upperQuartile", "max"),
  operateOn=c("residuals", "weights"), ...)

Arguments

rmaPlm: An @RmaPlm object.
summaryMethod: A character specifying what summarization method should be used.
operateOn: A character specifying what statistic to operate on.
...: Arguments passed to constructor of UnitModel.

Fields and Methods

Methods:

	`fit`	-
	`getCdf`	-
	`getDataSet`	-
	`getFirmaSet`	-
	`getName`	-
	`getPlm`	-
	`getTags`	-

Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction, getParameters

Methods inherited from Model:
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Author

Ken Simpson, Henrik Bengtsson