Package: aroma.affymetrix
Class GcContentNormalization
Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--AromaTransform
~~~~~~~~~~~~|
~~~~~~~~~~~~+--Transform
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--ChipEffectTransform
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--GcContentNormalization
Directly known subclasses:
public static class GcContentNormalization
extends ChipEffectTransform
GcContentNormalization(dataSet=NULL, ..., targetFunction=NULL, subsetToFit=NULL)
A CnChipEffectSet.
Additional arguments passed to the constructor of
ChipEffectTransform.
A function. The target function to which all arrays
should be normalized to.
The units from which the normalization curve should
be estimated. If NULL, all are considered.
Methods:
getCdf | - | |
process | - |
Methods inherited from ChipEffectTransform:
getRootPath
Methods inherited from Transform:
getOutputDataSet, getOutputFiles
Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags
Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString
Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis
This class requires an Aroma unit GC-content (UGC) file.
Henrik Bengtsson