Package: aroma.affymetrix
Class HetLogAddPlm
Object
~~|
~~+--ParametersInterface
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~~~~~~~+--Model
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~~~~~~~~~~~~+--UnitModel
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--MultiArrayUnitModel
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--ProbeLevelModel
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~~~~~~~~~~~~~~~~~~~~~~~~~~~+--RmaPlm
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--HetLogAddPlm
Directly known subclasses:
HetLogAddCnPlm, HetLogAddSnpPlm
public abstract static class HetLogAddPlm
extends RmaPlm
This class represents a log-additive model similar to the one described in Irizarry et al (2003), except that the errors may have different variances for different probes.
HetLogAddPlm(...)
Arguments passed to RmaPlm.
Methods:
No methods defined.
Methods inherited from RmaPlm:
getAsteriskTags, getCalculateResidualsFunction, getParameters, getRlmFitFunctions
Methods inherited from ProbeLevelModel:
calculateResidualSet, calculateWeights, fit, getAsteriskTags, getCalculateResidualsFunction, getChipEffectSet, getProbeAffinityFile, getResidualSet, getRootPath, getWeightsSet
Methods inherited from MultiArrayUnitModel:
getListOfPriors, setListOfPriors, validate
Methods inherited from UnitModel:
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction, getParameters
Methods inherited from Model:
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags
Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString
Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis
Henrik Bengtsson
RmaPlm.