SingleArrayUnitModel

Package: aroma.affymetrix 
Class SingleArrayUnitModel 
<code>Object</code> 
<code>~~|</code> 
<code>~~+--</code><code>ParametersInterface</code> 
<code>~~~~~~~|</code> 
<code>~~~~~~~+--</code><code>Model</code> 
<code>~~~~~~~~~~~~|</code> 
<code>~~~~~~~~~~~~+--</code><code>UnitModel</code> 
<code>~~~~~~~~~~~~~~~~~|</code> 
<code>~~~~~~~~~~~~~~~~~+--</code><code>SingleArrayUnitModel</code> 
Directly known subclasses: 
 
public abstract static class SingleArrayUnitModel 
extends UnitModel 
This abstract class represents a unit model that fits one model per unit
 based on signals from a single arrays.
 The nature of a single-array unit model is that each array can be fitted
 independently of the others.

classes

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

SingleArrayUnitModel function

<dl> <dt>...</dt>
<dd>Arguments passed to <code>UnitModel</code>.</dd></dl>

Arguments

Methods: <table class="table">
<tr><td></td><td><code>fit</code></td><td>-</td></tr>
</table>Methods inherited from UnitModel: 
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction, getParameters
Methods inherited from Model: 
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags
Methods inherited from ParametersInterface: 
getParameterSets, getParameters, getParametersAsString
Methods inherited from Object: 
$, $&lt;-, [[, [[&lt;-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

Fields and Methods

Author

Package: aroma.affymetrix 
Class SingleArrayUnitModel 
<code>Object</code> 
<code>~~|</code> 
<code>~~+--</code><code>ParametersInterface</code> 
<code>~~~~~~~|</code> 
<code>~~~~~~~+--</code><code>Model</code> 
<code>~~~~~~~~~~~~|</code> 
<code>~~~~~~~~~~~~+--</code><code>UnitModel</code> 
<code>~~~~~~~~~~~~~~~~~|</code> 
<code>~~~~~~~~~~~~~~~~~+--</code><code>SingleArrayUnitModel</code> 
Directly known subclasses: 
 
public abstract static class SingleArrayUnitModel 
extends UnitModel 


This abstract class represents a unit model that fits one model per unit
 based on signals from a single arrays.
 The nature of a single-array unit model is that each array can be fitted
 independently of the others.

The SingleArrayUnitModel class — SingleArrayUnitModel

<dl>

 <dt>...</dt>
<dd>Arguments passed to <code>UnitModel</code>.</dd>

</dl>

Methods: <table class='table'>
<tr><td></td><td><code>fit</code></td><td>-</td></tr>
</table>



Methods inherited from UnitModel: 
findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction, getParameters
Methods inherited from Model: 
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags
Methods inherited from ParametersInterface: 
getParameterSets, getParameters, getParametersAsString
Methods inherited from Object: 
$, $&lt;-, [[, [[&lt;-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis

SingleArrayUnitModel: The SingleArrayUnitModel class

Description

Usage

Arguments

Fields and Methods

Author