Package: aroma.affymetrix
Class SpatialReporter
Object
~~|
~~+--GenericReporter
~~~~~~~|
~~~~~~~+--AffymetrixFileSetReporter
~~~~~~~~~~~~|
~~~~~~~~~~~~+--AffymetrixCelSetReporter
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--SpatialReporter
Directly known subclasses:
public abstract static class SpatialReporter
extends AffymetrixCelSetReporter
A SpatialReporter generates image files of spatial representations of cell signals for each of the arrays in the input set.
SpatialReporter(..., reference=NULL)
Arguments passed to AffymetrixCelSetReporter.
An optional reference AffymetrixCelFile.
Methods:
addColorMap | - | |
getColorMaps | - | |
plotMargins | - | |
process | - | |
setColorMaps | - |
Methods inherited from AffymetrixCelSetReporter:
as.character, getChipType, getDataSet, getPath, nbrOfArrays
Methods inherited from AffymetrixFileSetReporter:
getFileSet, getInputName, getInputTags
Methods inherited from GenericReporter:
as.character, getAlias, getAsteriskTags, getFullName, getInputName, getInputTags, getMainPath, getName, getPath, getReportSet, getRootPath, getTags, process, setAlias, setup
Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis
Henrik Bengtsson