Package: aroma.affymetrix
Class UnitModel
Object
~~|
~~+--ParametersInterface
~~~~~~~|
~~~~~~~+--Model
~~~~~~~~~~~~|
~~~~~~~~~~~~+--UnitModel
Directly known subclasses:
AffineCnPlm, AffinePlm, AffineSnpPlm, AlleleSummation, AvgCnPlm, AvgPlm, AvgSnpPlm, ExonRmaPlm, FirmaModel, HetLogAddCnPlm, HetLogAddPlm, HetLogAddSnpPlm, MbeiCnPlm, MbeiPlm, MbeiSnpPlm, MultiArrayUnitModel, ProbeLevelModel, RmaCnPlm, RmaPlm, RmaSnpPlm, SingleArrayUnitModel
public abstract static class UnitModel
extends Model
This class is abstract and represents a generic unit model, i.e. a model that is applied to each unit separately.
UnitModel(dataSet=NULL, probeModel=c("pm", "mm", "pm-mm", "min1(pm-mm)", "pm+mm"),
shift=0, ...)
An AffymetrixCelSet to which this model should
be fitted.
A character string specifying how PM and MM values
should be modeled. By default only PM signals are used.
An optional amount the signals should be shifted (translated) before fitting the model.
Arguments passed to the constructor of Model.
Methods:
findUnitsTodo | - |
Methods inherited from Model:
as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags
Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString
Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis
Henrik Bengtsson