Estimates the baseline signal chromosome by chromosome.
# S3 method for ChipEffectSet
calculateBaseline(this, chromosomes=NULL, ploidy=2, defaultPloidy=NA, all=FALSE,
force=FALSE, verbose=FALSE, ...)
An integer vector specifying for which chromsosomes
the baseline should be estimated.
If NULL, all chromosomes are considered.
An integer specifying the ploidy that the baseline
should have.
An integer specifying the default ploidy of
chromosomes that have not explicitly been allocated one.
If TRUE, signals are averaged also for cells that are not
on the genome.
If TRUE, the CEL file that stores the is recreated.
See Verbose.
Not used.
Henrik Bengtsson
getAverageFile().
For more information see ChipEffectSet.