createMonocellCdf.AffymetrixCdfFile

AffymetrixCdfFile.createMonocellCdf

createMonocellCdf,AffymetrixCdfFile-method

AffymetrixCdfFile.createMonoCell

createMonoCell.AffymetrixCdfFile

createMonoCell,AffymetrixCdfFile-method

Creates a mono-cell version of the CDF.

methods

internal

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system.  The only parameter that limits the number of chips that can be processed is the amount of available disk space.  The Aroma Framework has successfully been used in studies to process tens of thousands of arrays.  This package has actively been used since 2006.

Henrik Bengtsson

aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets

James Bullard

Kasper Hansen

Pierre Neuvial

Elizabeth Purdom

Mark Robinson

Ken Simpson

createMonocellCdf.AffymetrixCdfFile function

<dl> <dt>chipType</dt>
<dd>The chip type of the new CDF.</dd> <dt>tags</dt>
<dd>Tags added to the chip type of the new CDF.</dd> <dt>path</dt>
<dd>The path where to store the new CDF file.</dd> <dt>nbrOfCellsPerField</dt>
<dd>Number of cells per group field the new CDF
 should have.</dd> <dt>...</dt>
<dd>Additional arguments passed to <code>writeCdf</code>.</dd> <dt>ram</dt>
<dd>A <code><a href="/link/double?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::double">double</a></code> saying if more or less units should be converted
 per chunk. A smaller value uses less memory.</dd> <dt>verbose</dt>
<dd>A <code><a href="/link/logical?package=aroma.affymetrix&version=3.2.2" data-mini-rdoc="aroma.affymetrix::logical">logical</a></code> or <code>Verbose</code>.</dd></dl>

Arguments

Author

Creates a mono-cell version of the CDF — createMonocellCdf.AffymetrixCdfFile

<dl>

 <dt>chipType</dt>
<dd>The chip type of the new CDF.</dd>

 <dt>tags</dt>
<dd>Tags added to the chip type of the new CDF.</dd>

 <dt>path</dt>
<dd>The path where to store the new CDF file.</dd>

 <dt>nbrOfCellsPerField</dt>
<dd>Number of cells per group field the new CDF
 should have.</dd>

 <dt>...</dt>
<dd>Additional arguments passed to <code>writeCdf</code>.</dd>

 <dt>ram</dt>
<dd>A <code><a href='https://rdrr.io/r/base/double.html'>double</a></code> saying if more or less units should be converted
 per chunk. A smaller value uses less memory.</dd>

 <dt>verbose</dt>
<dd>A <code><a href='https://rdrr.io/r/base/logical.html'>logical</a></code> or <code>Verbose</code>.</dd>

</dl>

Creates a mono-cell version of the CDF

createMonocellCdf.AffymetrixCdfFile: Creates a mono-cell version of the CDF

Description

Usage

Value

Arguments

Author

See Also