Extracts an in-memory ExpressionSet object from a ChipEffectSet object.
Note that any modifications done to the extracted object will not
be reflected in the original chip-effect set.
# S3 method for ChipEffectSet
extractExpressionSet(this, ..., logBase=2, orderUnitsBy=c("asis", "lexicographic"),
annotationPkg=NULL, verbose=FALSE)Returns an ExpressionSet-class object.
Optional argument passed to *extractMatrix().
An integer specifying the base to use when
log-transforming the signals. If NULL, the signals are not
transformed, but kept as is.
(optional) A character string specifies a
Bioconductor (ChipDb, CDF environment or PDInfo) annotation package,
which then sets the 'annotation' slot of the returned object.
If "ChipDb", "cdf" or "PDInfo" th corresponding
ChipDB, CDF environment or PDInfo package is inferred from
the CDF's chip type.
See Verbose.
Henrik Bengtsson
For more information see ChipEffectSet.